How it works
In contrast with typical oxygen-based measurements of algal photosynthesis, where photosynthesis is derived from the change in O2 concentration over time, the LI-6800 is an open, flow-through, steady-state gas exchange system where CO2 and O2 concentrations are constant during the measurement.
A differential CO2 measurement
In the 6800-18 Aquatic Chamber, the carbon assimilation rate is determined from the mass balance of an air stream before and after it interacts with a liquid sample. The CO2 and water vapor concentrations of the air stream are measured by a pair of high-precision infrared gas analyzers (IRGA). Assimilation is calculated from the concentration differences and flow rate:

Fundamentally, this mass balance gives the flux of CO2 between the liquid sample and the cuvette headspace. The flux is coupled to the true biological carbon assimilation rate by mass transfer at the air-liquid interface and the kinetics of the carbonate system for the aquatic sample.
When normalized to cell density, mass, or chlorophyll content, the aquatic chamber provides measurements as µmol CO2 cell-1 s-1, µmol CO2 mg-1 s-1, and µmol CO2 µg-1 s-1, respectively.
- The water vapor difference between the incoming and outgoing airstreams is minimized by a patent-pending method.
- Water vapor concentrations are included in the carbon assimilation calculation to account for volumetric dilution.
Rapid equilibration of gas-phase CO2 and CO2 in solution through aeration of liquid samples
A carefully controlled aeration scheme ensures that the mass transfer coefficient is not limiting and that the measured flux represents the biological assimilation rate of the sample. To keep the carbonate system at a steady state during measurements, carbonic anhydrase (CA) is added to the sample media for rapid hydration of CO2 and interconversion with bicarbonate (HCO3–) .

Steady state sample conditions
The LI-6800 precisely controls environmental conditions of the sample, including the CO2 concentration in headspace air and the light environment according to your preferences.
- The CO2 concentration that the sample is subject to is stable during the measurement. The instrument maintains the CO2 concentration with a mixer/scrubber system, preventing either CO2 or O2 from accumulating in the aquatic sample or headspace.
- The instrument controls light in the chamber – total light, as well as proportions of blue, red, and far-red – enabling a wide variety of light response measurements.
- With an external recirculating water bath, the sample temperature can be maintained at setpoints from >0 °C to 50 °C. Sample temperature is measured and recorded with the dataset.
These features enable time-series data collection on a sample while environmental conditions are kept stable. This ensures that the measured biological response is in the context of known, steady-state conditions.

Chlorophyll a fluorescence
Simultaneous measurements of CO2 gas exchange and PAM chlorophyll a fluorescence of an aquatic sample provide a more complete impression of photosynthetic processes than either technique alone. CO2 exchange measurements are indicators of the photosynthetic interaction between algae and dissolved inorganic carbon in solution. Chlorophyll a fluorescence is an indicator of the light reactions of the organisms.
When combined, they reveal more about the photochemistry of algae than either technique alone.

Example measurements
From basic irradiance response measurements to complex multifactor experiments, the aquatic chamber can be used to evaluate biological responses to different environmental conditions.
Algal photosynthetic response to irradiance at constant CO2
Figure 3 shows assimilation measurements on Chlorella at ambient oxygen (21%) and low oxygen (0.5%) in response to light (Q). The CO2 concentration entering the chamber was held constant at 400 µmol mol-1 by the LI-6800 system. Air with 21% oxygen was ambient; low-oxygen air was from a tank of 0.5% oxygen balanced in air. Chamber temperature was held constant at 25 °C using an external water bath. Cells were measured in a saltwater media at 17 ppt salinity.
When O2 concentrations are reduced in solution, the likelihood of oxygenation of RuBP by RuBisCO—the first step of photorespiration—is reduced, and the overall efficiency of carbon assimilation relative to energy capture increases. There is little impact on the efficiency of PSII, shown here by the near identical behavior of ΦPSII. Photorespiration impacts the strength of electron sinks such that 1-qL may be expected to decrease some with an increase in photorespiration (Figure 4).
Active regulation of a portion of NPQ related to cyclic electron flow balances the energetic products of photochemistry, ATP, and NADPH—so as photorespiration is suppressed at low oxygen, down regulation of NPQ is observed (Figure 5).
Algal photosynthetic response to CO2 at constant O2 and light intensity
The photosynthetic response to CO2 was measured on Monoraphidium at ambient O2 concentration and 700 µmol photons m-2 s-1 light intensity. The CO2 concentration entering the chamber was controlled at different setpoints during these measurements. Chamber temperature was held constant at 25 °C using an external water bath. Cells were measured in a freshwater media buffered to pH 7.0 with a TRIS buffer.
The photosynthetic response to CO2 is non-linear in nature (Figure 6). At low concentrations, CO2 is limiting, and assimilation changes proportionally to the concentration.

LI-6800 Aquatic Chamber with 9968-338 Sample Adapter Kit
Sargassum photosynthetic response to irradiance at constant CO2
With the sample adapter, the aquatic chamber can be used to measure the photosynthetic response of samples that must remain in humid air, as well as samples that are too large to fit into the upper chamber opening, such as coral. Figure 8 shows the irradiance response of Sargassum as measured with the aquatic chamber.
Figure 8.Sargassum photosynthetic response measurements, including assimilation, PhiPSII, and non-photochemical quenching plotted against irradiance (Q). Values are means of three biological replicate curves. Error bars are standard error
LI-COR 6800-18 Aquatic Chamber – Sigmatech Inc. Philippines